Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments

• Ying Yao ,

  Roles Data curation, Formal analysis, Software, Visualization, Writing – original draft

  * E-mail: ying.xiaodai2@gmail.com (YY); s.w.qiao@medisin.uio.no (SWQ)

  Affiliation Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway

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• Asima Zia ,

  Contributed equally to this work with: Asima Zia, Łukasz Wyrożemski

  Roles Investigation, Resources

  Affiliation Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway

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• Łukasz Wyrożemski ,

  Contributed equally to this work with: Asima Zia, Łukasz Wyrożemski

  Roles Investigation, Resources

  Affiliation K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway

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• Ida Lindeman,

  Roles Software, Writing – review & editing

  Affiliations Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway, K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway

  http://orcid.org/0000-0001-8343-2842

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• Geir Kjetil Sandve ,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  ¶‡ These authors also contributed equally to this work.

  Affiliations K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway, Department of Informatics, University of Oslo, Oslo, Norway

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• Shuo-Wang Qiao

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: ying.xiaodai2@gmail.com (YY); s.w.qiao@medisin.uio.no (SWQ)

  ¶‡ These authors also contributed equally to this work.

  Affiliations Department of Immunology, Centre for Immune Regulation, University of Oslo, Oslo, Norway, K.G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway

  http://orcid.org/0000-0002-8679-1557

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