Geospatial distribution of Mycobacterium tuberculosis genotypes in Africa

• Violet N. Chihota ,

  Contributed equally to this work with: Violet N. Chihota, Antoinette Niehaus

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Validation, Writing – original draft, Writing – review & editing

  * E-mail: vchihota@auruminstitute.org

  Affiliations DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa, The Aurum Institute, Johannesburg, South Africa, School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa

  http://orcid.org/0000-0003-1444-9266

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• Antoinette Niehaus ,

  Contributed equally to this work with: Violet N. Chihota, Antoinette Niehaus

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• Elizabeth M. Streicher,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• Xia Wang,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Department of Mathematical Sciences, University of Cincinnati, Cincinnati, Ohio, United States of America

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• Samantha L. Sampson,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• Peter Mason,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Biomedical Research and Training Institute, Harare, Zimbabwe

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• Gunilla Källenius,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden

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• Sayoki G. Mfinanga,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation National Institute for Medical Research Muhimbili Medical Research Centre, Dar es Saalam, Tanzania

  http://orcid.org/0000-0001-9067-2684

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• Marnomorney Pillay,

  Roles Methodology, Writing – review & editing

  Affiliation Department of Medical Microbiology University of KwaZulu Natal, Durban, South Africa

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• Marisa Klopper,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• Webster Kasongo,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Tropical Diseases Research Centre, Ndola, Zambia

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• Marcel A. Behr,

  Roles Methodology, Writing – review & editing

  Affiliation Division of Infectious Diseases, Department of Medicine McGill University Health Centre, Montreal, Quebec, Canada

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• Nicolaas C. Gey van Pittius,

  Roles Methodology, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• Paul D. van Helden,

  Roles Conceptualization, Methodology, Supervision, Validation, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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• David Couvin,

  Roles Data curation, Methodology, Resources, Validation, Writing – review & editing

  Affiliation WHO Supranational TB Reference Laboratory, Institut Pasteur de la Guadeloupe, Abymes, Guadeloupe, France

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• Nalin Rastogi,

  Roles Data curation, Methodology, Resources, Writing – review & editing

  Affiliation WHO Supranational TB Reference Laboratory, Institut Pasteur de la Guadeloupe, Abymes, Guadeloupe, France

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•  [ ... ],
• Robin M. Warren

  Roles Conceptualization, Formal analysis, Methodology, Visualization, Writing – review & editing

  Affiliation DST/NRF Centre of Excellence for Biomedical Tuberculosis Research /SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa

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