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Open Access

Peer-reviewed

Research Article

An open-source tool for analysis and automatic identification of dendritic spines using machine learning

Michael S. Smirnov ,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: Michael.Smirnov@mpfi.org

Affiliation Neuronal Signal Transduction, Max Planck Florida Institute for Neuroscience, Jupiter, Florida, United States of America

http://orcid.org/0000-0003-2248-8863

⨯
Tavita R. Garrett,

Roles Data curation, Formal analysis, Investigation, Writing – review & editing

Affiliations Neuronal Signal Transduction, Max Planck Florida Institute for Neuroscience, Jupiter, Florida, United States of America, Neuroscience, Oregon Health and Science University School of Medicine, Portland, Oregon, United States of America
⨯
Ryohei Yasuda

Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Writing – review & editing

Affiliation Neuronal Signal Transduction, Max Planck Florida Institute for Neuroscience, Jupiter, Florida, United States of America
⨯

An open-source tool for analysis and automatic identification of dendritic spines using machine learning

Michael S. Smirnov,
Tavita R. Garrett,
Ryohei Yasuda

x

Published: July 5, 2018
https://doi.org/10.1371/journal.pone.0199589
See the preprint

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Neuronal dendrites
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Neural networks
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Machine learning algorithms
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Dendritic structure
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Open source software
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Fluorescence imaging
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Geodesics
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Machine learning
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