NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples

Hua Yu; Bingke Jiao; Lu Lu; Pengfei Wang; Shuangcheng Chen; Chengzhi Liang; Wei Liu

doi:10.1371/journal.pone.0192613

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Open Access

Peer-reviewed

Research Article

NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples

Hua Yu ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft

* E-mail: hyu200886@ntu.edu.cn, yuhua200886@163.com, huayu@genetics.ac.cn (HY); cliang@genetics.ac.cn (CL); weiliu@ntu.edu.cn(WL)

Current address: Institute of Reproductive Medicine, Nantong Medical College and School of Pharmacy, Nantong University, Nantong, China

Affiliations Nantong Medical College and School of Pharmacy, Nantong University, Nantong, China, State Key Laboratory of Plant Genomics, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, China

http://orcid.org/0000-0001-6691-1139

⨯
Bingke Jiao,

Roles Writing – review & editing

Affiliations State Key Laboratory of Plant Genomics, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, China
⨯
Lu Lu,

Roles Writing – review & editing

Affiliation Nantong Polytechnic College, Nantong, China
⨯
Pengfei Wang,

Roles Writing – review & editing

Affiliation Nantong Medical College and School of Pharmacy, Nantong University, Nantong, China
⨯
Shuangcheng Chen,

Roles Writing – review & editing

Affiliation Nantong Medical College and School of Pharmacy, Nantong University, Nantong, China
⨯
Chengzhi Liang ,

Roles Funding acquisition, Supervision

* E-mail: hyu200886@ntu.edu.cn, yuhua200886@163.com, huayu@genetics.ac.cn (HY); cliang@genetics.ac.cn (CL); weiliu@ntu.edu.cn(WL)

Affiliations State Key Laboratory of Plant Genomics, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, Beijing, China, University of Chinese Academy of Sciences, Beijing, China
⨯
Wei Liu

Roles Funding acquisition, Writing – review & editing

* E-mail: hyu200886@ntu.edu.cn, yuhua200886@163.com, huayu@genetics.ac.cn (HY); cliang@genetics.ac.cn (CL); weiliu@ntu.edu.cn(WL)

Affiliation Nantong Medical College and School of Pharmacy, Nantong University, Nantong, China
⨯

NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples

Hua Yu,
Bingke Jiao,
Lu Lu,
Pengfei Wang,
Shuangcheng Chen,
Chengzhi Liang,
Wei Liu

Published: February 9, 2018
https://doi.org/10.1371/journal.pone.0192613

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