A comprehensive analysis of breast cancer microbiota and host gene expression

Kevin J. Thompson; James N. Ingle; Xiaojia Tang; Nicholas Chia; Patricio R. Jeraldo; Marina R. Walther-Antonio; Karunya K. Kandimalla; Stephen Johnson; Janet Z. Yao; Sean C. Harrington; Vera J. Suman; Liewei Wang; Richard L. Weinshilboum; Judy C. Boughey; Jean-Pierre Kocher; Heidi Nelson; Matthew P. Goetz; Krishna R. Kalari

doi:10.1371/journal.pone.0188873

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Open Access

Peer-reviewed

Research Article

A comprehensive analysis of breast cancer microbiota and host gene expression

Kevin J. Thompson,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing

Affiliations Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America

http://orcid.org/0000-0002-9348-4686

⨯
James N. Ingle,

Roles Funding acquisition, Writing – review & editing

Affiliation Department of Oncology, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Xiaojia Tang,

Roles Methodology, Writing – review & editing

Affiliations Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Nicholas Chia,

Roles Methodology, Writing – review & editing

Affiliations Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Surgery, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Patricio R. Jeraldo,

Roles Writing – review & editing

Affiliations Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Surgery, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Marina R. Walther-Antonio,

Roles Writing – review & editing

Affiliations Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Surgery, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Karunya K. Kandimalla,

Roles Writing – review & editing

Affiliation Department of Pharmaceutics, University of Minnesota, Minneapolis, MN, United States of America
⨯
Stephen Johnson,

Roles Data curation, Writing – review & editing

Affiliations Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Janet Z. Yao,

Roles Data curation

Affiliation Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Sean C. Harrington,

Roles Data curation, Writing – review & editing

Affiliation Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Vera J. Suman,

Roles Data curation, Methodology, Writing – review & editing

Affiliation Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Liewei Wang,

Roles Writing – review & editing

Affiliation Department of Molecular Pharmacology & Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Richard L. Weinshilboum,

Roles Writing – review & editing

Affiliation Department of Molecular Pharmacology & Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Judy C. Boughey,

Roles Conceptualization, Writing – review & editing

Affiliation Department of Surgery, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Jean-Pierre Kocher,

Roles Writing – review & editing

Affiliations Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Heidi Nelson,

Roles Writing – review & editing

Affiliation Department of Surgery, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
Matthew P. Goetz,

Roles Funding acquisition, Writing – review & editing

Affiliation Department of Oncology, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
[ ... ],
Krishna R. Kalari

Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

* E-mail: Kalari.Krishna@mayo.edu

Affiliations Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America, Department of Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota, United States of America
⨯
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A comprehensive analysis of breast cancer microbiota and host gene expression

Kevin J. Thompson,
James N. Ingle,
Xiaojia Tang,
Nicholas Chia,
Patricio R. Jeraldo,
Marina R. Walther-Antonio,
Karunya K. Kandimalla,
Stephen Johnson,
Janet Z. Yao,
Sean C. Harrington

Published: November 30, 2017
https://doi.org/10.1371/journal.pone.0188873

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Breast cancer
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Microbiome
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Lung and intrathoracic tumors
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Gene sequencing
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