Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India

• Shuba Varshini Alampalli ,

  Contributed equally to this work with: Shuba Varshini Alampalli, Michael M. Thomson

  Roles Data curation, Formal analysis, Methodology, Validation, Writing – original draft

  Affiliation Centre for Infectious Disease Research (CIDR), Indian Institute of Science, Bengaluru, India

  ⨯
• Michael M. Thomson ,

  Contributed equally to this work with: Shuba Varshini Alampalli, Michael M. Thomson

  Roles Methodology, Writing – review & editing

  Affiliation Centro Nacional de Microbiología, Instituto de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Majadahonda, Madrid, Spain

  ⨯
• Raghavan Sampathkumar,

  Roles Methodology

  Affiliation Centre for Infectious Disease Research (CIDR), Indian Institute of Science, Bengaluru, India

  ⨯
• Karthi Sivaraman,

  Roles Methodology

  Affiliation Centre for Infectious Disease Research (CIDR), Indian Institute of Science, Bengaluru, India

  ⨯
• Anto Jesuraj U. K. J.,

  Roles Resources

  Affiliation Department of Infectious Diseases, St John’s Research Institute, Bengaluru, India

  ⨯
• Chirag Dhar,

  Roles Resources

  Affiliation Department of Infectious Diseases, St John’s Research Institute, Bengaluru, India

  ⨯
• George D. Souza,

  Roles Resources

  Affiliation Department of Pulmonary Medicine & Department of Infectious Diseases, St John’s Research Institute, Bengaluru, India

  ⨯
• Neil Berry ,

  Roles Investigation, Methodology, Writing – review & editing

  ¶‡ These authors also contributed equally to this work.

  Affiliation Division of Virology, NIBSC, South Mimms, United Kingdom

  ⨯
• Annapurna Vyakarnam

  Roles Conceptualization, Investigation, Methodology, Writing – review & editing

  * E-mail: anna.vyakarnam@kcl.ac.uk, avyakarnam@cidr.iisc.ernet.in

  ¶‡ These authors also contributed equally to this work.

  Affiliations Centre for Infectious Disease Research (CIDR), Indian Institute of Science, Bengaluru, India, Department of Infectious Diseases, King’s College London, London, United Kingdom

  http://orcid.org/0000-0003-4260-258X

  ⨯