ADEPt, a semantically-enriched pipeline for extracting adverse drug events from free-text electronic health records

• Ehtesham Iqbal,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom

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• Robbie Mallah,

  Roles Data curation, Investigation, Resources, Validation

  Affiliation Pharmacy Department, South London and Maudsley NHS Foundation Trust, London, United Kingdom

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• Daniel Rhodes,

  Roles Writing – original draft

  Affiliation The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom

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• Honghan Wu,

  Roles Investigation, Methodology

  Affiliation The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom

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• Alvin Romero,

  Roles Data curation, Validation

  Affiliation SLaM BioResource for Mental Health, South London and Maudsley NHS Foundation Trust and King’s College London, London, United Kingdom

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• Nynn Chang,

  Roles Data curation, Validation

  Affiliation SLaM BioResource for Mental Health, South London and Maudsley NHS Foundation Trust and King’s College London, London, United Kingdom

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• Olubanke Dzahini,

  Roles Data curation, Supervision, Validation

  Affiliation Pharmacy Department, South London and Maudsley NHS Foundation Trust, London, United Kingdom

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• Chandra Pandey,

  Roles Formal analysis

  Affiliations The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom, NIHR Biomedical Research Centre for Mental Health, South London and Maudsley NHS Foundation, London, United Kingdom, Biomedical Research Unit for Dementia, South London and Maudsley NHS Foundation, London, United Kingdom

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• Matthew Broadbent,

  Roles Project administration, Resources, Software

  Affiliation NIHR Biomedical Research Centre for Mental Health, South London and Maudsley NHS Foundation, London, United Kingdom, Biomedical Research Unit for Dementia, South London and Maudsley NHS Foundation, London, United Kingdom

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• Robert Stewart,

  Roles Conceptualization, Resources

  Affiliations NIHR Biomedical Research Centre for Mental Health, South London and Maudsley NHS Foundation, London, United Kingdom, Biomedical Research Unit for Dementia, South London and Maudsley NHS Foundation, London, United Kingdom, Department of Health Service & Population Research, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London, United Kingdom

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• Richard J. B. Dobson ,

  Contributed equally to this work with: Richard J. B. Dobson, Zina M. Ibrahim

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  Affiliations The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom, NIHR Biomedical Research Centre for Mental Health, South London and Maudsley NHS Foundation, London, United Kingdom, Biomedical Research Unit for Dementia, South London and Maudsley NHS Foundation, London, United Kingdom, The Farr Institute of Health Informatics Research, UCL Institute of Health Informatics, University College London, London, United Kingdom, NIHR Biomedical Research Centre, University College London Hospitals, London, United Kingdom

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• Zina M. Ibrahim

  Contributed equally to this work with: Richard J. B. Dobson, Zina M. Ibrahim

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: zina.ibrahim@kcl.ac.uk (ZI); richard.j.dobson@kcl.ac.uk (RD)

  Affiliations The Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, De Crespigny Park, London, United Kingdom, NIHR Biomedical Research Centre for Mental Health, South London and Maudsley NHS Foundation, London, United Kingdom, Biomedical Research Unit for Dementia, South London and Maudsley NHS Foundation, London, United Kingdom, The Farr Institute of Health Informatics Research, UCL Institute of Health Informatics, University College London, London, United Kingdom, NIHR Biomedical Research Centre, University College London Hospitals, London, United Kingdom

  http://orcid.org/0000-0001-6203-2727

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