Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar

• Rondroarivelo Rasoahanitralisoa,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – original draft

  Affiliation Mycobacteria Unit, Institut Pasteur of Madagascar, Antananarivo, Madagascar, Ecole Doctorale Science de la Vie et de l’Environnement, Faculté des Sciences, Université d’Antananarivo, Antananarivo, Madagascar

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• Niaina Rakotosamimanana ,

  Roles Conceptualization, Formal analysis, Methodology, Supervision, Validation, Writing – review & editing

  * E-mail: niaina@pasteur.mg

  Affiliation Mycobacteria Unit, Institut Pasteur of Madagascar, Antananarivo, Madagascar

  http://orcid.org/0000-0002-2352-9797

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• David Stucki,

  Roles Methodology, Resources

  Affiliations Department of Medical Parasitology and infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland, University of Basel, Basel, Switzerland

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• Christophe Sola,

  Roles Methodology, Resources

  Affiliation University of Basel, Basel, Switzerland

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• Sebastien Gagneux,

  Roles Methodology, Resources, Writing – review & editing

  Affiliations Department of Medical Parasitology and infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland, Institut for Integrative Cell Biology, I2BC, UMR9198 CEA-CNRS-UP Saclay, Orsay, France

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• Voahangy Rasolofo Razanamparany

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  Affiliation Mycobacteria Unit, Institut Pasteur of Madagascar, Antananarivo, Madagascar

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