Childhood tuberculosis is associated with decreased abundance of T cell gene transcripts and impaired T cell function

• Cheryl Hemingway ,

  Roles Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  ¶‡ These authors also contributed equally to this work.

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Maurice Berk ,

  Roles Data curation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  ¶‡ These authors also contributed equally to this work.

  Affiliation Department of Mathematics, Faculty of Natural Sciences, Imperial College London, 80 Queen's Gate, London, United Kingdom

  ⨯
• Suzanne T. Anderson ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Writing – review & editing

  ¶‡ These authors also contributed equally to this work.

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  http://orcid.org/0000-0003-1213-7787

  ⨯
• Victoria J. Wright,

  Roles Formal analysis, Investigation, Project administration, Writing – original draft, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  http://orcid.org/0000-0001-7826-1516

  ⨯
• Shea Hamilton,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Hariklia Eleftherohorinou,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Myrsini Kaforou,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Greg M. Goldgof,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Katy Hickman,

  Roles Methodology, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  http://orcid.org/0000-0002-3480-6497

  ⨯
• Beate Kampmann,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• Johan Schoeman,

  Roles Investigation, Writing – review & editing

  Affiliation Tygerberg Hospital, University of Stellenbosch, Cape Town, South Africa

  ⨯
• Brian Eley,

  Roles Resources, Supervision, Writing – review & editing

  Affiliation Red Cross War Memorial Children’s Hospital, University of Cape Town, Rondebosch, Cape Town, South Africa

  ⨯
• David Beatty,

  Roles Resources, Supervision, Writing – review & editing

  Affiliation Red Cross War Memorial Children’s Hospital, University of Cape Town, Rondebosch, Cape Town, South Africa

  http://orcid.org/0000-0002-5797-1188

  ⨯
• Sandra Pienaar,

  Roles Investigation, Project administration, Writing – review & editing

  Affiliation Red Cross War Memorial Children’s Hospital, University of Cape Town, Rondebosch, Cape Town, South Africa

  http://orcid.org/0000-0002-2329-5599

  ⨯
• Mark P. Nicol,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa, National Health Laboratory Service, Cape Town, South Africa

  ⨯
• Michael J. Griffiths,

  Roles Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom

  ⨯
• Simon J. Waddell,

  Roles Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Brighton and Sussex Medical School, University of Sussex, Brighton, United Kingdom

  ⨯
• Sandra M. Newton,

  Roles Methodology, Writing – review & editing

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  http://orcid.org/0000-0001-6545-9558

  ⨯
• Lachlan J. Coin,

  Roles Conceptualization, Data curation, Supervision, Visualization, Writing – review & editing

  Affiliation Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
• David A. Relman,

  Roles Conceptualization, Data curation, Resources, Software, Writing – review & editing

  Affiliations Department of Medicine, Stanford University School of Medicine, Stanford, California, United States of America, Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America, Veterans Affairs Palo Alto Health Care System, Palo Alto, California, United States of America

  ⨯
• Giovanni Montana ,

  Contributed equally to this work with: Giovanni Montana, Michael Levin

  Roles Data curation, Formal analysis, Supervision, Visualization, Writing – review & editing

  Affiliations Department of Mathematics, Faculty of Natural Sciences, Imperial College London, 80 Queen's Gate, London, United Kingdom, Department of Biomedical Engineering, King's College London, London, United Kingdom

  ⨯
•  [ ... ],
• Michael Levin

  Contributed equally to this work with: Giovanni Montana, Michael Levin

  Roles Conceptualization, Funding acquisition, Methodology, Visualization, Writing – original draft

  * E-mail: m.levin@imperial.ac.uk

  Affiliation Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, Norfolk Place, London, United Kingdom

  ⨯
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