ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences

Fwu-Shan Shieh; Patrick Jongeneel; Jamin D. Steffen; Selena Lin; Surbhi Jain; Wei Song; Ying-Hsiu Su

doi:10.1371/journal.pone.0182843

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Open Access

Peer-reviewed

Research Article

ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences

Fwu-Shan Shieh,

Roles Conceptualization, Data curation, Formal analysis, Software, Validation, Writing – original draft, Writing – review & editing

Affiliations JBS Science, Inc., Doylestown, Pennsylvania, United States of America, U-Screen Dx Inc., Doylestown, Pennsylvania, United States of America
⨯
Patrick Jongeneel,

Roles Conceptualization, Data curation, Formal analysis, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation JBS Science, Inc., Doylestown, Pennsylvania, United States of America
⨯
Jamin D. Steffen,

Roles Project administration, Supervision, Writing – original draft, Writing – review & editing

Affiliation JBS Science, Inc., Doylestown, Pennsylvania, United States of America
⨯
Selena Lin,

Roles Conceptualization, Formal analysis, Investigation, Resources

Affiliations U-Screen Dx Inc., Doylestown, Pennsylvania, United States of America, Drexel University College of Medicine, Philadelphia, Pennsylvania, United States of America
⨯
Surbhi Jain,

Roles Project administration, Supervision, Writing – review & editing

Affiliation JBS Science, Inc., Doylestown, Pennsylvania, United States of America
⨯
Wei Song ,

Roles Conceptualization, Funding acquisition, Resources, Writing – original draft, Writing – review & editing

* E-mail: Ying-hsiu.su@bblumberg.org (Y.H.S.); Fsong@jbs-science.com (W.S.)

Affiliations JBS Science, Inc., Doylestown, Pennsylvania, United States of America, U-Screen Dx Inc., Doylestown, Pennsylvania, United States of America
⨯
Ying-Hsiu Su

Roles Conceptualization, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: Ying-hsiu.su@bblumberg.org (Y.H.S.); Fsong@jbs-science.com (W.S.)

Affiliations Drexel University College of Medicine, Philadelphia, Pennsylvania, United States of America, The Baruch S. Blumberg Institute, Doylestown, Pennsylvania, United States of America

http://orcid.org/0000-0003-0969-0215

⨯

ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences

Fwu-Shan Shieh,
Patrick Jongeneel,
Jamin D. Steffen,
Selena Lin,
Surbhi Jain,
Wei Song,
Ying-Hsiu Su

Published: August 22, 2017
https://doi.org/10.1371/journal.pone.0182843

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