A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes

• Lena Takayasu,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan

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• Wataru Suda,

  Roles Data curation, Investigation, Methodology, Writing – review & editing

  Affiliations Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan, School of Medicine, Keio University, 35 Shinanomachi, Shinjuku-ku, Tokyo, 160-8582, Japan

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• Eiichiro Watanabe,

  Roles Investigation, Methodology, Resources

  Affiliation RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan

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• Shinji Fukuda,

  Roles Methodology

  Affiliations RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan, Institute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata, 997-0052, Japan

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• Kageyasu Takanashi,

  Roles Methodology, Software

  Affiliation Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan

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• Hiroshi Ohno,

  Roles Methodology, Resources

  Affiliation RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan

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• Misako Takayasu,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Institute of Innovative Research, Tokyo Institute of Technology, G3-52, 4259, Nagatsutacho, Midori-ku, Yokohama-shi, Kanagawa 226-8502, Japan

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• Hideki Takayasu,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Sony Computer Science Laboratories, Inc. 3-14-13, Higashigotanda, Shinagawa-ku, Tokyo, 141-0022, Japan

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• Masahira Hattori

  Roles Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: hattori@aoni.waseda.jp

  Affiliations Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan, Graduate School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo Shinjuku-ku, Tokyo, 169-8555, Japan

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