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Open Access
Peer-reviewed
Research Article
biochem4j: Integrated and extensible biochemical knowledge through graph databases
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Neil Swainston ,
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: neil.swainston@manchester.ac.uk
Affiliation Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom
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Riza Batista-Navarro,
Roles Conceptualization, Funding acquisition, Project administration, Supervision, Validation, Writing – review & editing
Affiliation School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Pablo Carbonell,
Roles Software, Validation, Writing – review & editing
Affiliation Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom
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Paul D. Dobson,
Roles Software, Validation, Writing – review & editing
Affiliation School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Mark Dunstan,
Roles Validation, Writing – review & editing
Affiliation Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom
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Adrian J. Jervis,
Roles Validation, Writing – review & editing
Affiliation Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom
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Maria Vinaixa,
Roles Software, Validation, Writing – review & editing
Affiliation Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom
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Alan R. Williams,
Roles Resources, Validation, Writing – review & editing
Affiliation School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Sophia Ananiadou,
Roles Funding acquisition, Validation, Writing – review & editing
Affiliation School of Computer Science, The University of Manchester, Manchester, United Kingdom
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Jean-Loup Faulon,
Roles Funding acquisition, Validation, Writing – review & editing
Affiliations Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom, Institute of Systems and Synthetic Biology, University of Evry, Val d'Essonne, Evry, France, School of Chemistry, The University of Manchester, Manchester, United Kingdom
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Pedro Mendes,
Roles Validation, Writing – review & editing
Affiliation Center for Quantitative Medicine, UConn Health, 263 Farmington Avenue, Farmington, CT, United States of America
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Douglas B. Kell,
Roles Funding acquisition, Validation, Writing – review & editing
Affiliations Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom, School of Chemistry, The University of Manchester, Manchester, United Kingdom
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Nigel S. Scrutton,
Roles Funding acquisition, Validation, Writing – review & editing
Affiliations Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom, School of Chemistry, The University of Manchester, Manchester, United Kingdom
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Rainer Breitling
Roles Conceptualization, Funding acquisition, Project administration, Supervision, Validation, Writing – review & editing
Affiliations Manchester Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom, School of Chemistry, The University of Manchester, Manchester, United Kingdom
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biochem4j: Integrated and extensible biochemical knowledge through graph databases
- Neil Swainston,
- Riza Batista-Navarro,
- Pablo Carbonell,
- Paul D. Dobson,
- Mark Dunstan,
- Adrian J. Jervis,
- Maria Vinaixa,
- Alan R. Williams,
- Sophia Ananiadou,
- Jean-Loup Faulon
- Published: July 14, 2017
- https://doi.org/10.1371/journal.pone.0179130