Molecular simulations and Markov state modeling reveal the structural diversity and dynamics of a theophylline-binding RNA aptamer in its unbound state

Open Access

Peer-reviewed

Research Article

Becka M. Warfield,

Affiliation Department of Physical Sciences, University of Washington, Bothell, Washington, United States of America
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Peter C. Anderson

* E-mail: pca4@uw.edu

Affiliation Department of Physical Sciences, University of Washington, Bothell, Washington, United States of America

http://orcid.org/0000-0002-5494-9866

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RNA structure
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Biochemical simulations
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Free energy
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Markov models
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Nucleotides
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Biophysical simulations
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Molecular structure
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RNA folding
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