Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Open Access

Peer-reviewed

Research Article

Dries Decap,

Affiliations Department of Information Technology, IDLab, Ghent University - imec, Ghent, Belgium, ExaScience Life Lab, Leuven, Belgium

http://orcid.org/0000-0002-1710-5541

⨯
Joke Reumers,

Affiliations Janssen Research & Development, a division of Janssen Pharmaceutica N.V., Beerse, Belgium, ExaScience Life Lab, Leuven, Belgium
⨯
Charlotte Herzeel,

Affiliations Imec, Leuven, Belgium, ExaScience Life Lab, Leuven, Belgium
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Pascal Costanza,

Affiliations Intel Corporation Belgium, Leuven, Belgium, ExaScience Life Lab, Leuven, Belgium
⨯
Jan Fostier

* E-mail: jan.fostier@ugent.be

Affiliations Department of Information Technology, IDLab, Ghent University - imec, Ghent, Belgium, ExaScience Life Lab, Leuven, Belgium
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Genomics
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Wildebeest
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Computational pipelines
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Gene expression
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RNA sequencing
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Sequence alignment
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Next-generation sequencing
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Transcriptome analysis
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