Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters

Yu Shang; Johannes Sikorski; Michael Bonkowski; Anna-Maria Fiore-Donno; Ellen Kandeler; Sven Marhan; Runa S. Boeddinghaus; Emily F. Solly; Marion Schrumpf; Ingo Schöning; Tesfaye Wubet; Francois Buscot; Jörg Overmann

doi:10.1371/journal.pone.0173765

Loading metrics

Open Access

Peer-reviewed

Research Article

Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters

Yu Shang ,

* E-mail: yus14@dsmz.de

Affiliation Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, D-38124, Braunschweig, Deutschland
⨯
Johannes Sikorski,

Affiliations Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, D-38124, Braunschweig, Deutschland, German Center for Integrative Biodiversity Research (iDiv) Jena Halle Leipzig, Deutscher Platz 5e, 04103 Leipzig, Deutschland
⨯
Michael Bonkowski,

Affiliation Department of Terrestrial Ecology, Institute of Zoology, University of Cologne, Zülpicher Straße 47b, D-50674 Köln, Deutschland
⨯
Anna-Maria Fiore-Donno,

Affiliation Department of Terrestrial Ecology, Institute of Zoology, University of Cologne, Zülpicher Straße 47b, D-50674 Köln, Deutschland
⨯
Ellen Kandeler,

Affiliation Institute of Soil Science and Land Evaluation, Soil Biology Section (310b), University of Hohenheim, Emil-Wolff-Straße. 27, D-70593 Stuttgart, Deutschland
⨯
Sven Marhan,

Affiliation Institute of Soil Science and Land Evaluation, Soil Biology Section (310b), University of Hohenheim, Emil-Wolff-Straße. 27, D-70593 Stuttgart, Deutschland
⨯
Runa S. Boeddinghaus,

Affiliation Institute of Soil Science and Land Evaluation, Soil Biology Section (310b), University of Hohenheim, Emil-Wolff-Straße. 27, D-70593 Stuttgart, Deutschland
⨯
Emily F. Solly,

Affiliation Max-Planck-Institut für Biogeochemie, Hans-Knöll-Straße 10, D-07745 Jena, Deutschland
⨯
Marion Schrumpf,

Affiliation Max-Planck-Institut für Biogeochemie, Hans-Knöll-Straße 10, D-07745 Jena, Deutschland
⨯
Ingo Schöning,

Affiliation Max-Planck-Institut für Biogeochemie, Hans-Knöll-Straße 10, D-07745 Jena, Deutschland
⨯
Tesfaye Wubet,

Affiliations Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, D-06120, Halle/Saale, Deutschland, German Center for Integrative Biodiversity Research (iDiv) Jena Halle Leipzig, Deutscher Platz 5e, 04103 Leipzig, Deutschland
⨯
Francois Buscot,

Affiliations Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Theodor-Lieser-Straße 4, D-06120, Halle/Saale, Deutschland, German Center for Integrative Biodiversity Research (iDiv) Jena Halle Leipzig, Deutscher Platz 5e, 04103 Leipzig, Deutschland
⨯
Jörg Overmann

Affiliations Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, D-38124, Braunschweig, Deutschland, German Center for Integrative Biodiversity Research (iDiv) Jena Halle Leipzig, Deutscher Platz 5e, 04103 Leipzig, Deutschland
⨯

Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters

Yu Shang,
Johannes Sikorski,
Michael Bonkowski,
Anna-Maria Fiore-Donno,
Ellen Kandeler,
Sven Marhan,
Runa S. Boeddinghaus,
Emily F. Solly,
Marion Schrumpf,
Ingo Schöning

Published: March 13, 2017
https://doi.org/10.1371/journal.pone.0173765

Reader Comments (0)

Post a new comment on this article

Subject Areas
?

For more information about PLOS Subject Areas, click here.
We want your feedback. Do these Subject Areas make sense for this article? Click the target next to the incorrect Subject Area and let us know. Thanks for your help!

Species interactions
Is the Subject Area "Species interactions" applicable to this article?

Thanks for your feedback.
Species diversity
Is the Subject Area "Species diversity" applicable to this article?

Thanks for your feedback.
Predation
Is the Subject Area "Predation" applicable to this article?

Thanks for your feedback.
Biodiversity
Is the Subject Area "Biodiversity" applicable to this article?

Thanks for your feedback.
Linear regression analysis
Is the Subject Area "Linear regression analysis" applicable to this article?

Thanks for your feedback.
Soil perturbation
Is the Subject Area "Soil perturbation" applicable to this article?

Thanks for your feedback.
RNA extraction
Is the Subject Area "RNA extraction" applicable to this article?

Thanks for your feedback.
Species delimitation
Is the Subject Area "Species delimitation" applicable to this article?

Thanks for your feedback.