Prophetic Granger Causality to infer gene regulatory networks

Daniel E. Carlin; Evan O. Paull; Kiley Graim; Christopher K. Wong; Adrian Bivol; Peter Ryabinin; Kyle Ellrott; Artem Sokolov; Joshua M. Stuart

doi:10.1371/journal.pone.0170340

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Open Access

Peer-reviewed

Research Article

Prophetic Granger Causality to infer gene regulatory networks

Daniel E. Carlin,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

Affiliation University of California San Diego, Department of Medicine, La Jolla, CA, United States of America
⨯
Evan O. Paull,

Roles Formal analysis, Investigation

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Kiley Graim,

Roles Formal analysis

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Christopher K. Wong,

Roles Data curation, Formal analysis

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Adrian Bivol,

Roles Formal analysis

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Peter Ryabinin,

Roles Formal analysis

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Kyle Ellrott,

Roles Formal analysis

Affiliation Oregon Health Sciences University, Department of Biomedical Engineering, Portland, OR, United States of America
⨯
Artem Sokolov ,

Roles Conceptualization, Formal analysis, Methodology, Supervision

* E-mail: jstuart@ucsc.edu (JMS); Artem.Sokolov@gmail.com (AS)

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America
⨯
Joshua M. Stuart

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: jstuart@ucsc.edu (JMS); Artem.Sokolov@gmail.com (AS)

Affiliation University of California Santa Cruz, Department of Biomolecular Engineering, Santa Cruz, CA, United States of America

http://orcid.org/0000-0002-2171-565X

⨯

Prophetic Granger Causality to infer gene regulatory networks

Daniel E. Carlin,
Evan O. Paull,
Kiley Graim,
Christopher K. Wong,
Adrian Bivol,
Peter Ryabinin,
Kyle Ellrott,
Artem Sokolov,
Joshua M. Stuart

Published: December 6, 2017
https://doi.org/10.1371/journal.pone.0170340

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