Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing

Open Access

Peer-reviewed

Research Article

Susan R. Leonard ,

* E-mail: Susan.Leonard@fda.hhs.gov

Affiliation Division of Molecular Biology, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, Maryland, United States of America
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Mark K. Mammel,

Affiliation Division of Molecular Biology, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, Maryland, United States of America
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David W. Lacher,

Affiliation Division of Molecular Biology, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, Maryland, United States of America
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Christopher A. Elkins

Affiliation Division of Molecular Biology, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, Laurel, Maryland, United States of America
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Metagenomics
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Spinach
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Bacterial genomics
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Single nucleotide polymorphisms
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Genomics
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Genome analysis
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Shotgun sequencing
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Phylogenetics
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