Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications

Xiao-Lin Wu; Jiaqi Xu; Guofei Feng; George R. Wiggans; Jeremy F. Taylor; Jun He; Changsong Qian; Jiansheng Qiu; Barry Simpson; Jeremy Walker; Stewart Bauck

doi:10.1371/journal.pone.0161719

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Open Access

Peer-reviewed

Research Article

Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications

Xiao-Lin Wu ,

* E-mail: NWu@neogen.com

Affiliation Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America
⨯
Jiaqi Xu,

Affiliations Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America, Department of Statistics, University of Nebraska, Lincoln, Nebraska, United States of America
⨯
Guofei Feng,

Affiliations Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America, Department of Statistics, University of Nebraska, Lincoln, Nebraska, United States of America
⨯
George R. Wiggans,

Affiliation Animal Genomics and Improvement Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, Maryland, United States of America
⨯
Jeremy F. Taylor,

Affiliation Division of Animal Sciences, University of Missouri, Columbia, Missouri, United States of America
⨯
Jun He,

Affiliation College of Animal Sciences and Technology, Hunan Agricultural University, Changsha, China
⨯
Changsong Qian,

Affiliation Marketing and Business Development, Neogen Bio-Scientific Technology (Shanghai) Company Ltd., Shanghai, China
⨯
Jiansheng Qiu,

Affiliation Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America
⨯
Barry Simpson,

Affiliation Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America
⨯
Jeremy Walker,

Affiliation Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America
⨯
Stewart Bauck

Affiliation Bioinformatics and Biostatistics, GeneSeek (a Neogen Company), Lincoln, Nebraska, United States of America
⨯

Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications

Xiao-Lin Wu,
Jiaqi Xu,
Guofei Feng,
George R. Wiggans,
Jeremy F. Taylor,
Jun He,
Changsong Qian,
Jiansheng Qiu,
Barry Simpson,
Jeremy Walker

Published: September 1, 2016
https://doi.org/10.1371/journal.pone.0161719

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Single nucleotide polymorphisms
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Genomics
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Chromosome mapping
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Variant genotypes
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