Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

Catherine Pichat; David Couvin; Gérard Carret; Isabelle Frédénucci; Véronique Jacomo; Anne Carricajo; Sandrine Boisset; Oana Dumitrescu; Jean-Pierre Flandrois; Gérard Lina; Nalin Rastogi

doi:10.1371/journal.pone.0153580

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Peer-reviewed

Research Article

Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

Catherine Pichat,

Affiliation Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France
⨯
David Couvin,

Affiliation WHO Supranational TB Reference Laboratory, Institut Pasteur de la Guadeloupe, Abymes, France
⨯
Gérard Carret,

Affiliations Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France, Laboratoire de Biométrie et Biologie Évolutive, CNRS-UMR 5558, Université Lyon 1, Villeurbanne, France
⨯
Isabelle Frédénucci,

Affiliation Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France
⨯
Véronique Jacomo,

Affiliation Service des mycobactéries, Laboratoire Biomnis, Lyon, France
⨯
Anne Carricajo,

Affiliation Laboratoire de bactériologie, CHU de Saint-Étienne Nord, Saint-Étienne, France
⨯
Sandrine Boisset,

Affiliation Laboratoire de bactériologie, CHU de Grenoble, Grenoble, France
⨯
Oana Dumitrescu,

Affiliations Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France, Centre Internationl de Recherche en Infectiologie, INSERM U1111, Université Lyon 1, Lyon, France
⨯
Jean-Pierre Flandrois,

Affiliations Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France, Laboratoire de Biométrie et Biologie Évolutive, CNRS-UMR 5558, Université Lyon 1, Villeurbanne, France
⨯
Gérard Lina,

Affiliations Laboratoire de bactériologie, Centre hospitalier Lyon-Sud, Pierre-Bénite, France, Centre Internationl de Recherche en Infectiologie, INSERM U1111, Université Lyon 1, Lyon, France
⨯
Nalin Rastogi

* E-mail: nrastogi@pasteur-guadeloupe.fr

Affiliation WHO Supranational TB Reference Laboratory, Institut Pasteur de la Guadeloupe, Abymes, France
⨯

Combined Genotypic, Phylogenetic, and Epidemiologic Analyses of Mycobacterium tuberculosis Genetic Diversity in the Rhône Alpes Region, France

Catherine Pichat,
David Couvin,
Gérard Carret,
Isabelle Frédénucci,
Véronique Jacomo,
Anne Carricajo,
Sandrine Boisset,
Oana Dumitrescu,
Jean-Pierre Flandrois,
Gérard Lina

Published: April 29, 2016
https://doi.org/10.1371/journal.pone.0153580

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Tuberculosis
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Phylogenetic analysis
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France
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Mycobacterium tuberculosis
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Genotyping
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