Towards Plant Species Identification in Complex Samples: A Bioinformatics Pipeline for the Identification of Novel Nuclear Barcode Candidates

Alexandre Angers-Loustau; Mauro Petrillo; Valentina Paracchini; Dafni M. Kagkli; Patricia E. Rischitor; Antonio Puertas Gallardo; Alex Patak; Maddalena Querci; Joachim Kreysa

doi:10.1371/journal.pone.0147692

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Open Access

Peer-reviewed

Research Article

Towards Plant Species Identification in Complex Samples: A Bioinformatics Pipeline for the Identification of Novel Nuclear Barcode Candidates

Alexandre Angers-Loustau ,

Contributed equally to this work with: Alexandre Angers-Loustau, Mauro Petrillo

* E-mail: alexandre.angers@ec.europa.eu

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Mauro Petrillo ,

Contributed equally to this work with: Alexandre Angers-Loustau, Mauro Petrillo

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Valentina Paracchini,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Dafni M. Kagkli,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Patricia E. Rischitor,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Antonio Puertas Gallardo,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Alex Patak,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Maddalena Querci,

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯
Joachim Kreysa

Affiliation Molecular Biology and Genomic Unit, Institute for Health and Consumer Protection, Joint Research Center, European Commission, Ispra, Italy
⨯

Towards Plant Species Identification in Complex Samples: A Bioinformatics Pipeline for the Identification of Novel Nuclear Barcode Candidates

Alexandre Angers-Loustau,
Mauro Petrillo,
Valentina Paracchini,
Dafni M. Kagkli,
Patricia E. Rischitor,
Antonio Puertas Gallardo,
Alex Patak,
Maddalena Querci,
Joachim Kreysa

Published: January 25, 2016
https://doi.org/10.1371/journal.pone.0147692

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Maize
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Plant genomics
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Polymerase chain reaction
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Bioinformatics
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DNA barcoding
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Next-generation sequencing
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Plants
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Plant genomes
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