Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

• James A. Stapleton,

  Affiliation Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, United States of America

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• Jeongwoon Kim,

  Affiliation Department of Plant Biology, Michigan State University, East Lansing, Michigan, United States of America

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• John P. Hamilton,

  Affiliation Department of Plant Biology, Michigan State University, East Lansing, Michigan, United States of America

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• Ming Wu,

  Affiliation Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, 48109, United States of America

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• Luiz C. Irber,

  Affiliation Department of Microbiology and Molecular Genetics and Department of Computer Science and Engineering, Michigan State University, East Lansing, Michigan, United States of America

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• Rohan Maddamsetti,

  Affiliations BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, Michigan, United States of America, Department of Integrative Biology, Michigan State University, East Lansing, Michigan, United States of America

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• Bryan Briney,

  Affiliations Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America, Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, The Scripps Research Institute, La Jolla, California, United States of America, International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America

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• Linsey Newton,

  Affiliation Department of Plant Biology, Michigan State University, East Lansing, Michigan, United States of America

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• Dennis R. Burton,

  Affiliations Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, California, United States of America, Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery, The Scripps Research Institute, La Jolla, California, United States of America, International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, California, United States of America

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• C. Titus Brown,

  Affiliations Department of Microbiology and Molecular Genetics and Department of Computer Science and Engineering, Michigan State University, East Lansing, Michigan, United States of America, Population Health and Reproduction, University of California Davis, Davis, California, United States of America

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• Christina Chan,

  Affiliation Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, United States of America

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• C. Robin Buell,

  Affiliation Department of Plant Biology, Michigan State University, East Lansing, Michigan, United States of America

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• Timothy A. Whitehead

  * E-mail: taw@egr.msu.edu

  Affiliations Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, United States of America, Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, Michigan, United States of America

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