Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids; Floor Hugenholtz; Vitor Martins dos Santos; Hauke Smidt; Michiel Kleerebezem; Peter J. Schaap

doi:10.1371/journal.pone.0146423

Loading metrics

Open Access

Peer-reviewed

Research Article

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids ,

Contributed equally to this work with: Mark Davids, Floor Hugenholtz

Affiliations Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯
Floor Hugenholtz ,

Contributed equally to this work with: Mark Davids, Floor Hugenholtz

Affiliations Laboratory of Microbiology, Wageningen University, Dreijenplein 10, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯
Vitor Martins dos Santos,

Affiliations Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯
Hauke Smidt,

Affiliations Laboratory of Microbiology, Wageningen University, Dreijenplein 10, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯
Michiel Kleerebezem,

Affiliations Host-Microbe Interactomics Group, Wageningen University, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯
Peter J. Schaap

* E-mail: peter.schaap@wur.nl

Affiliations Laboratory of Systems and Synthetic Biology, Wageningen University, Dreijenplein 10, Wageningen, The Netherlands, Netherlands Consortium for Systems Biology, TI Food and Nutrition, Wageningen, The Netherlands
⨯

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids,
Floor Hugenholtz,
Vitor Martins dos Santos,
Hauke Smidt,
Michiel Kleerebezem,
Peter J. Schaap

Published: January 12, 2016
https://doi.org/10.1371/journal.pone.0146423

Reader Comments (0)

Post a new comment on this article

Subject Areas
?

For more information about PLOS Subject Areas, click here.
We want your feedback. Do these Subject Areas make sense for this article? Click the target next to the incorrect Subject Area and let us know. Thanks for your help!

Mammalian genomics
Is the Subject Area "Mammalian genomics" applicable to this article?

Thanks for your feedback.
Sequence alignment
Is the Subject Area "Sequence alignment" applicable to this article?

Thanks for your feedback.
RNA sequencing
Is the Subject Area "RNA sequencing" applicable to this article?

Thanks for your feedback.
Mice
Is the Subject Area "Mice" applicable to this article?

Thanks for your feedback.
Taxonomy
Is the Subject Area "Taxonomy" applicable to this article?

Thanks for your feedback.
Microbial taxonomy
Is the Subject Area "Microbial taxonomy" applicable to this article?

Thanks for your feedback.
Mouse models
Is the Subject Area "Mouse models" applicable to this article?

Thanks for your feedback.
Gastrointestinal tract
Is the Subject Area "Gastrointestinal tract" applicable to this article?

Thanks for your feedback.