Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

• Diego Chaves-Moreno,

  Affiliation Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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• Melissa L. Wos-Oxley,

  Affiliation Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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• Ruy Jáuregui,

  Current Address: AgResearch Grasslands Tennent Drive, Palmerston North, New Zealand

  Affiliation Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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• Eva Medina,

  Affiliation Infection and Immunology Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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• Andrew P. A. Oxley ,

  Contributed equally to this work with: Andrew P. A. Oxley, Dietmar H. Pieper

  Current Address: South Australian Research and Development Institute—2 Hamra Avenue, West Beach, SA, Australia

  Affiliations Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany, Infection and Immunology Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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• Dietmar H. Pieper

  Contributed equally to this work with: Andrew P. A. Oxley, Dietmar H. Pieper

  * E-mail: dpi@helmholtz-hzi.de

  Affiliation Microbial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany

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