Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing

Carly F. Summers; Colwyn M. Gulliford; Craig H. Carlson; Jacquelyn A. Lillis; Maryn O. Carlson; Lance Cadle-Davidson; David H. Gent; Christine D. Smart

doi:10.1371/journal.pone.0143665

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Peer-reviewed

Research Article

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing

Carly F. Summers,

Affiliation Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Geneva, New York, United States of America
⨯
Colwyn M. Gulliford,

Affiliation Cornell Laboratory for Accelerator-based Sciences and Education, Cornell University, Ithaca, New York, United States of America
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Craig H. Carlson,

Affiliation Horticulture Section, School of Integrative Plant Science, Cornell University, Geneva, New York, United States of America
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Jacquelyn A. Lillis,

Affiliation United States Department of Agriculture Agricultural Research Service, Grape Genetics Research Unit, Geneva, New York, United States of America
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Maryn O. Carlson,

Affiliation Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Geneva, New York, United States of America
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Lance Cadle-Davidson,

Affiliation United States Department of Agriculture Agricultural Research Service, Grape Genetics Research Unit, Geneva, New York, United States of America
⨯
David H. Gent,

Affiliation United States Department of Agriculture Agricultural Research Service, Forage Seed and Cereal Research Unit and Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Christine D. Smart

* E-mail: cds14@cornell.edu

Affiliation Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Geneva, New York, United States of America
⨯

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing

Carly F. Summers,
Colwyn M. Gulliford,
Craig H. Carlson,
Jacquelyn A. Lillis,
Maryn O. Carlson,
Lance Cadle-Davidson,
David H. Gent,
Christine D. Smart

Published: November 23, 2015
https://doi.org/10.1371/journal.pone.0143665

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Single nucleotide polymorphisms
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RNA sequencing
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Sequence alignment
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Plant pathogens
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