miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras; Christopher J. Mitchell; Jason R. Myers; Simone Gupta; Lien-Chun Weng; John M. Ashton; Toby C. Cornish; Akhilesh Pandey; Marc K. Halushka

doi:10.1371/journal.pone.0143066

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Open Access

Peer-reviewed

Research Article

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras ,

Contributed equally to this work with: Alexander S. Baras, Christopher J. Mitchell

Affiliation Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
Christopher J. Mitchell ,

Contributed equally to this work with: Alexander S. Baras, Christopher J. Mitchell

Affiliation McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
Jason R. Myers,

Affiliation Genomics Research Center, University of Rochester, Rochester, New York, United States of America
⨯
Simone Gupta,

Affiliation McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
Lien-Chun Weng,

Affiliation Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
John M. Ashton,

Affiliation Genomics Research Center, University of Rochester, Rochester, New York, United States of America
⨯
Toby C. Cornish,

Affiliation Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
Akhilesh Pandey,

Affiliations McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America, Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯
Marc K. Halushka

* E-mail: mhalush1@jhmi.edu

Affiliation Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
⨯

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras,
Christopher J. Mitchell,
Jason R. Myers,
Simone Gupta,
Lien-Chun Weng,
John M. Ashton,
Toby C. Cornish,
Akhilesh Pandey,
Marc K. Halushka

Published: November 16, 2015
https://doi.org/10.1371/journal.pone.0143066

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MicroRNAs
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Sequence alignment
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RNA alignment
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Entropy
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Small nucleolar RNA
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RNA sequencing
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Nucleotide sequencing
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Genomics
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