Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity

Ka-Cheung Luk; Michael G. Berg; Samia N. Naccache; Beniwende Kabre; Scot Federman; Dora Mbanya; Lazare Kaptué; Charles Y. Chiu; Catherine A. Brennan; John Hackett Jr

doi:10.1371/journal.pone.0141723

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Open Access

Peer-reviewed

Research Article

Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity

Ka-Cheung Luk ,

Contributed equally to this work with: Ka-Cheung Luk, Michael G. Berg

Affiliation Abbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, United States of America
⨯
Michael G. Berg ,

Contributed equally to this work with: Ka-Cheung Luk, Michael G. Berg

Affiliation Abbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, United States of America
⨯
Samia N. Naccache,

Affiliations Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America, UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, United States of America
⨯
Beniwende Kabre,

Affiliations Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America, UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, United States of America
⨯
Scot Federman,

Affiliations Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America, UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, United States of America
⨯
Dora Mbanya,

Affiliation Université de Yaoundé 1, Yaoundé, Cameroon
⨯
Lazare Kaptué,

Affiliation Université des Montagnes, Bangangté, Cameroon
⨯
Charles Y. Chiu,

Affiliations Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America, UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California, United States of America, Department of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, California, United States of America
⨯
Catherine A. Brennan,

Affiliation Abbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, United States of America
⨯
John Hackett Jr

* E-mail: john.hackett@abbott.com

Affiliation Abbott Diagnostics, Infectious Disease Research, Abbott Park, Illinois, United States of America
⨯

Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity

Ka-Cheung Luk,
Michael G. Berg,
Samia N. Naccache,
Beniwende Kabre,
Scot Federman,
Dora Mbanya,
Lazare Kaptué,
Charles Y. Chiu,
Catherine A. Brennan,
John Hackett Jr

Published: November 23, 2015
https://doi.org/10.1371/journal.pone.0141723

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Genomics
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HIV
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Next-generation sequencing
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Sequence alignment
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