Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

Nicolas Buisine; Xiaoan Ruan; Patrice Bilesimo; Alexis Grimaldi; Gladys Alfama; Pramila Ariyaratne; Fabianus Mulawadi; Jieqi Chen; Wing-Kin Sung; Edison T. Liu; Barbara A. Demeneix; Yijun Ruan; Laurent M. Sachs

doi:10.1371/journal.pone.0137526

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Peer-reviewed

Research Article

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

Nicolas Buisine,

Affiliation UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France
⨯
Xiaoan Ruan,

Affiliations The Jackson Laboratory of Genomic Medicine, Farmington, Connecticut, United States of America, Department of Genetics and Developmental Biology, University of Connecticut, Farmington, Connecticut, United States of America, Genome Institute of Singapore, Singapore, Singapore
⨯
Patrice Bilesimo,

Affiliations UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France, Watchfrog S.A.S., Evry, France
⨯
Alexis Grimaldi,

Affiliation UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France
⨯
Gladys Alfama,

Affiliation UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France
⨯
Pramila Ariyaratne,

Affiliation Genome Institute of Singapore, Singapore, Singapore
⨯
Fabianus Mulawadi,

Affiliation Genome Institute of Singapore, Singapore, Singapore
⨯
Jieqi Chen,

Affiliation Genome Institute of Singapore, Singapore, Singapore
⨯
Wing-Kin Sung,

Affiliation Genome Institute of Singapore, Singapore, Singapore
⨯
Edison T. Liu,

Affiliations The Jackson Laboratory of Genomic Medicine, Farmington, Connecticut, United States of America, Department of Genetics and Developmental Biology, University of Connecticut, Farmington, Connecticut, United States of America, Genome Institute of Singapore, Singapore, Singapore
⨯
Barbara A. Demeneix,

Affiliation UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France
⨯
Yijun Ruan ,

* E-mail: Yijun.Ruan@jax.org (YR); sachs@mnhn.fr (LMS)

Affiliations The Jackson Laboratory of Genomic Medicine, Farmington, Connecticut, United States of America, Department of Genetics and Developmental Biology, University of Connecticut, Farmington, Connecticut, United States of America, Genome Institute of Singapore, Singapore, Singapore
⨯
Laurent M. Sachs

* E-mail: Yijun.Ruan@jax.org (YR); sachs@mnhn.fr (LMS)

Affiliation UMR CNRS 7221, Muséum National d'Histoire Naturelle, Paris, France
⨯

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

Nicolas Buisine,
Xiaoan Ruan,
Patrice Bilesimo,
Alexis Grimaldi,
Gladys Alfama,
Pramila Ariyaratne,
Fabianus Mulawadi,
Jieqi Chen,
Wing-Kin Sung,
Edison T. Liu

Published: September 8, 2015
https://doi.org/10.1371/journal.pone.0137526

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