Optimal Threshold Determination for Interpreting Semantic Similarity and Particularity: Application to the Comparison of Gene Sets and Metabolic Pathways Using GO and ChEBI

Open Access

Peer-reviewed

Research Article

Charles Bettembourg ,

* E-mail: charles.bettembourg@irisa.fr

Affiliations Université de Rennes 1, Rennes, France, INRA, UMR1348 PEGASE, Saint-Gilles, France, Agrocampus OUEST, UMR1348 PEGASE, Rennes, France, IRISA, Campus de Beaulieu, Rennes, France, INRIA, Rennes, France
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Christian Diot,

Affiliations INRA, UMR1348 PEGASE, Saint-Gilles, France, Agrocampus OUEST, UMR1348 PEGASE, Rennes, France
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Olivier Dameron

Affiliations Université de Rennes 1, Rennes, France, IRISA, Campus de Beaulieu, Rennes, France, INRIA, Rennes, France
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Similarity measures
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Gene ontologies
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Ion channel gating
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Ion channels
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Neurotransmitters
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Histones
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Semantics
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Sulfates
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