Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

Sean M. Griffing; Duncan R. MacCannell; Amber J. Schmidtke; Molly M. Freeman; Eija Hyytiä-Trees; Peter Gerner-Smidt; Efrain M. Ribot; James L. Bono

doi:10.1371/journal.pone.0131967

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Research Article

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

Sean M. Griffing,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Duncan R. MacCannell,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Amber J. Schmidtke,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Molly M. Freeman,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Eija Hyytiä-Trees,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Peter Gerner-Smidt,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
Efrain M. Ribot,

Affiliation PulseNet Next Generation Subtyping Methods Unit, Division of Foodborne, Waterborne and Environmental Diseases, Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
⨯
James L. Bono

* E-mail: Jim.Bono@ars.usda.gov

Affiliation United States Meat Animal Research Center, United States Department of Agriculture, Agricultural Research Service, Clay Center, Nevada, United States of America
⨯

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

Sean M. Griffing,
Duncan R. MacCannell,
Amber J. Schmidtke,
Molly M. Freeman,
Eija Hyytiä-Trees,
Peter Gerner-Smidt,
Efrain M. Ribot,
James L. Bono

Published: July 1, 2015
https://doi.org/10.1371/journal.pone.0131967

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