Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation

Open Access

Peer-reviewed

Research Article

Kei Moritsugu ,

* E-mail: moritugu@tsurumi.yokohama-cu.ac.jp

Affiliation Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Japan
⨯
Ryotaro Koike,

Affiliation Graduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan
⨯
Kouki Yamada,

Affiliation Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Japan
⨯
Hiroaki Kato,

Affiliations Department of Structural Biology, Graduate School of Pharmaceutical Sciences, Kyoto University, 46–29 Shimoadachi-cho, Sakyo-ku, Kyoto, Japan, RIKEN Harima Institute at SPring-8, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, Japan
⨯
Akinori Kidera

Affiliation Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, Japan
⨯

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Crystal structure
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Biochemical simulations
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Molecular dynamics
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Glutamine
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Hierarchical clustering
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Protein structure
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Molecular structure
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Trees
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