Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm

Jérôme Azé; Christophe Sola; Jian Zhang; Florian Lafosse-Marin; Memona Yasmin; Rubina Siddiqui; Kristin Kremer; Dick van Soolingen; Guislaine Refrégier

doi:10.1371/journal.pone.0130912

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Open Access

Peer-reviewed

Research Article

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm

Jérôme Azé,

Affiliation LIRMM UM CNRS, UMR 5506, 860 rue de St Priest, 34095 Montpellier cedex 5, France
⨯
Christophe Sola,

Affiliation Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, rue Gregor Mendel, Bât 400, 91405 Orsay cedex, France
⨯
Jian Zhang,

Current address: Perkin-Elmer, No. 1670, Zhangheng Road, Zhangjiang High-Tech Park, Shanghai 201203, China

Affiliation Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, rue Gregor Mendel, Bât 400, 91405 Orsay cedex, France
⨯
Florian Lafosse-Marin,

Affiliation Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, rue Gregor Mendel, Bât 400, 91405 Orsay cedex, France
⨯
Memona Yasmin,

Affiliations Pakistan Institute for Engineering and Applied Sciences (PIEAS), Lehtrar Road, Nilore, Islamabad, Pakistan, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), P.O. Box # 577, Jhang Road, Faisalabad, Pakistan
⨯
Rubina Siddiqui,

Affiliation Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), P.O. Box # 577, Jhang Road, Faisalabad, Pakistan
⨯
Kristin Kremer,

Affiliation National Institute for Public Health and the Environment, P.O. Box 1, 3720 BA Bilthoven, The Netherlands
⨯
Dick van Soolingen,

Affiliations National Institute for Public Health and the Environment, P.O. Box 1, 3720 BA Bilthoven, The Netherlands, Department of Pulmonary Diseases and Department of Microbiology, Radbout University Nijmegen Medical Centre, University Lung Centre Dekkerswald, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands
⨯
Guislaine Refrégier

* E-mail: guislaine.refregier@u-psud.fr

Affiliation Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, rue Gregor Mendel, Bât 400, 91405 Orsay cedex, France
⨯

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm

Jérôme Azé,
Christophe Sola,
Jian Zhang,
Florian Lafosse-Marin,
Memona Yasmin,
Rubina Siddiqui,
Kristin Kremer,
Dick van Soolingen,
Guislaine Refrégier

Published: July 8, 2015
https://doi.org/10.1371/journal.pone.0130912

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Taxonomy
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Mycobacterium tuberculosis
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Machine learning algorithms
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Genotyping
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