Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

Yuanhao Zhang; Leahana Rowehl; Julia M. Krumsiek; Erika P. Orner; Nurmohammad Shaikh; Phillip I. Tarr; Erica Sodergren; George M. Weinstock; Edgar C. Boedeker; Xuejian Xiong; John Parkinson; Daniel N. Frank; Ellen Li; Grace Gathungu

doi:10.1371/journal.pone.0130902

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Open Access

Peer-reviewed

Research Article

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

Yuanhao Zhang,

Affiliation Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York, United States of America
⨯
Leahana Rowehl,

Affiliation Department of Medicine, Stony Brook University, Stony Brook, New York, United States of America
⨯
Julia M. Krumsiek,

Affiliation Department of Pediatrics, Stony Brook University, Stony Brook, New York, United States of America
⨯
Erika P. Orner,

Affiliation Department of Medicine, Stony Brook University, Stony Brook, New York, United States of America
⨯
Nurmohammad Shaikh,

Affiliation Department of Pediatrics, Washington University St. Louis, St. Louis, Missouri, United States of America
⨯
Phillip I. Tarr,

Affiliations Department of Pediatrics, Washington University St. Louis, St. Louis, Missouri, United States of America, Department of Molecular Microbiology, Washington University St. Louis, St. Louis, Missouri, United States of America
⨯
Erica Sodergren,

Current Address: Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America

Affiliation The Genome Institute, Washington University St. Louis, St. Louis, Missouri, United States of America
⨯
George M. Weinstock,

Current Address: Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America

Affiliation The Genome Institute, Washington University St. Louis, St. Louis, Missouri, United States of America
⨯
Edgar C. Boedeker,

Affiliation Department of Medicine, University of New Mexico, Albuquerque, New Mexico, United States of America
⨯
Xuejian Xiong,

Affiliation Program in Molecular Structure and Function, The Hospital for Sick Children, Toronto, Canada
⨯
John Parkinson,

Affiliation Department of Biochemistry & Molecular and Medical Genetics, University of Toronto, Toronto, Canada
⨯
Daniel N. Frank,

Affiliation Department of Medicine, University of Colorado, Denver, Colorado, United States of America
⨯
Ellen Li,

Affiliation Department of Medicine, Stony Brook University, Stony Brook, New York, United States of America
⨯
Grace Gathungu

* E-mail: grace.gathungu@stonybrookmedicine.edu

Affiliation Department of Pediatrics, Stony Brook University, Stony Brook, New York, United States of America
⨯

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis

Yuanhao Zhang,
Leahana Rowehl,
Julia M. Krumsiek,
Erika P. Orner,
Nurmohammad Shaikh,
Phillip I. Tarr,
Erica Sodergren,
George M. Weinstock,
Edgar C. Boedeker,
Xuejian Xiong

Published: June 30, 2015
https://doi.org/10.1371/journal.pone.0130902

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