'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens

Open Access

Peer-reviewed

Research Article

Colin J. Worby ,

* E-mail: cworby@hsph.harvard.edu

Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, United States of America
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Timothy D. Read

Affiliations Department of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, GA, United States of America, Department of Human Genetics, Emory University School of Medicine, Atlanta, GA, United States of America
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Genomics
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Epidemiology
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Pathogens
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Single nucleotide polymorphisms
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Evolutionary genetics
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Disease dynamics
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Simulation and modeling
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Phylogenetic analysis
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