Quantifying the Displacement of Mismatches in Multiple Sequence Alignment Benchmarks

Open Access

Peer-reviewed

Research Article

Punto Bawono ,

* E-mail: p.bawono@vu.nl (PB); j.heringa@vu.nl (JH)

Affiliation Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, Amsterdam, The Netherlands
⨯
Arjan van der Velde,

Current address: Bioinformatics Program, Boston University, Boston, MA 02215, USA

Affiliation Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, Amsterdam, The Netherlands
⨯
Sanne Abeln,

Affiliation Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, Amsterdam, The Netherlands
⨯
Jaap Heringa

* E-mail: p.bawono@vu.nl (PB); j.heringa@vu.nl (JH)

Affiliations Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, Amsterdam, The Netherlands, Amsterdam Institute for Molecules Medicines and Systems (AIMMS), VU University Amsterdam, Amsterdam, The Netherlands
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Multiple alignment calculation
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Sequence alignment
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Protein structure comparison
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CLUSTAL analysis
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Protein structure
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Sequence motif analysis
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Structural proteins
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User interfaces
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