Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome

Nicolas Tchitchek; David Safronetz; Angela L. Rasmussen; Craig Martens; Kimmo Virtaneva; Stephen F. Porcella; Heinz Feldmann; Hideki Ebihara; Michael G. Katze

doi:10.1371/journal.pone.0112617

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Open Access

Peer-reviewed

Research Article

Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome

Nicolas Tchitchek,

Affiliation Department of Microbiology, University of Washington, Seattle, Washington, United States of America
⨯
David Safronetz,

Affiliation Laboratory of Virology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Angela L. Rasmussen,

Affiliation Department of Microbiology, University of Washington, Seattle, Washington, United States of America
⨯
Craig Martens,

Affiliation Genomics Unit, Research Technologies Section, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Kimmo Virtaneva,

Affiliation Genomics Unit, Research Technologies Section, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Stephen F. Porcella,

Affiliation Genomics Unit, Research Technologies Section, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Heinz Feldmann,

Affiliation Laboratory of Virology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Hideki Ebihara ,

Contributed equally to this work with: Hideki Ebihara, Michael G. Katze

* E-mail: ebiharah@niaid.nih.gov (HE); honey@uw.edu (MK)

Affiliation Laboratory of Virology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America
⨯
Michael G. Katze

Contributed equally to this work with: Hideki Ebihara, Michael G. Katze

* E-mail: ebiharah@niaid.nih.gov (HE); honey@uw.edu (MK)

Affiliations Department of Microbiology, University of Washington, Seattle, Washington, United States of America, Washington National Primate Research Center, University of Washington, Seattle, Washington, United States of America
⨯

Sequencing, Annotation and Analysis of the Syrian Hamster (Mesocricetus auratus) Transcriptome

Nicolas Tchitchek,
David Safronetz,
Angela L. Rasmussen,
Craig Martens,
Kimmo Virtaneva,
Stephen F. Porcella,
Heinz Feldmann,
Hideki Ebihara,
Michael G. Katze

Published: November 14, 2014
https://doi.org/10.1371/journal.pone.0112617

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Transcriptome analysis
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Hamsters
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Sequence alignment
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Mammalian genomics
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CHO cells
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Genome annotation
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Phylogenetic analysis
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RNA sequencing
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