Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses

Open Access

Peer-reviewed

Research Article

Arthur W. Pightling,

Affiliation Listeriosis Reference Service for Canada, Research Division, Bureau of Microbial Hazards, Food Directorate, Health Products and Food Branch, Health Canada, Ottawa, Ontario, Canada
⨯
Nicholas Petronella,

Affiliation Biostatistics and Modelling Division, Bureau of Food Surveillance and Science Integration, Food Directorate, Health Products and Food Branch, Health Canada, Ottawa, Ontario, Canada
⨯
Franco Pagotto

* E-mail: Franco.Pagotto@hc-sc.gc.ca

Affiliation Listeriosis Reference Service for Canada, Research Division, Bureau of Microbial Hazards, Food Directorate, Health Products and Food Branch, Health Canada, Ottawa, Ontario, Canada
⨯

Reader Comments (0)

Sequence alignment
Is the Subject Area "Sequence alignment" applicable to this article?

Thanks for your feedback.
Single nucleotide polymorphisms
Is the Subject Area "Single nucleotide polymorphisms" applicable to this article?

Thanks for your feedback.
Listeria monocytogenes
Is the Subject Area "Listeria monocytogenes" applicable to this article?

Thanks for your feedback.
Nucleotide sequencing
Is the Subject Area "Nucleotide sequencing" applicable to this article?

Thanks for your feedback.
Genomics
Is the Subject Area "Genomics" applicable to this article?

Thanks for your feedback.
Biotechnology
Is the Subject Area "Biotechnology" applicable to this article?

Thanks for your feedback.
Phylogenetic analysis
Is the Subject Area "Phylogenetic analysis" applicable to this article?

Thanks for your feedback.
Archives
Is the Subject Area "Archives" applicable to this article?

Thanks for your feedback.