GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Open Access

Peer-reviewed

Research Article

Shuji Suzuki,

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯
Masanori Kakuta,

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯
Takashi Ishida,

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯
Yutaka Akiyama

* E-mail: akiyama@cs.titech.ac.jp

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯

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Database searching
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BLAST algorithm
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Sequence databases
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Computer hardware
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Acceleration
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Computer software
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Preprocessing
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Sequence similarity searching
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