Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

Patrick P. Edger; Michelle Tang; Kevin A. Bird; Dustin R. Mayfield; Gavin Conant; Klaus Mummenhoff; Marcus A. Koch; J. Chris Pires

doi:10.1371/journal.pone.0101341

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Peer-reviewed

Research Article

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

Patrick P. Edger ,

Contributed equally to this work with: Patrick P. Edger, Michelle Tang

Affiliations Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America, Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, California, United States of America
⨯
Michelle Tang ,

Contributed equally to this work with: Patrick P. Edger, Michelle Tang

Affiliation Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America
⨯
Kevin A. Bird,

Affiliation Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America
⨯
Dustin R. Mayfield,

Affiliation Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America
⨯
Gavin Conant,

Affiliations Informatics Institute, University of Missouri, Columbia, Missouri, United States of America, Division of Animal Sciences, University of Missouri, Columbia, Missouri, United States of America
⨯
Klaus Mummenhoff,

Affiliation Department of Biology, University of Osnabrück, Osnabrück, Germany
⨯
Marcus A. Koch,

Affiliation Department of Biodiversity and Plant Systematics, Heidelberg University, Heidelberg, Germany
⨯
J. Chris Pires

* E-mail: piresjc@missouri.edu

Affiliations Division of Biological Sciences, University of Missouri, Columbia, Missouri, United States of America, Informatics Institute, University of Missouri, Columbia, Missouri, United States of America
⨯

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

Patrick P. Edger,
Michelle Tang,
Kevin A. Bird,
Dustin R. Mayfield,
Gavin Conant,
Klaus Mummenhoff,
Marcus A. Koch,
J. Chris Pires

Published: July 1, 2014
https://doi.org/10.1371/journal.pone.0101341

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Phylogenetics
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RNA stem-loop structure
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RNA structure
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Plant phylogenetics
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Phylogenetic analysis
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Sequence alignment
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Ribosomal RNA
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Polyploidy
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