OTG-snpcaller: An Optimized Pipeline Based on TMAP and GATK for SNP Calling from Ion Torrent Data

Open Access

Peer-reviewed

Research Article

Pengyuan Zhu ,

Contributed equally to this work with: Pengyuan Zhu, Lingyu He, Yaqiao Li

Affiliation BGI-Shenzhen, Shenzhen, China
⨯
Lingyu He ,

Contributed equally to this work with: Pengyuan Zhu, Lingyu He, Yaqiao Li

Affiliation BGI-Shenzhen, Shenzhen, China
⨯
Yaqiao Li ,

Contributed equally to this work with: Pengyuan Zhu, Lingyu He, Yaqiao Li

Affiliation BGI-Shenzhen, Shenzhen, China
⨯
Wenpan Huang,

Affiliation BGI-Shenzhen, Shenzhen, China
⨯
Feng Xi,

Affiliation BGI-Shenzhen, Shenzhen, China
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Lin Lin,

Affiliation BGI-Shenzhen, Shenzhen, China
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Qihuan Zhi,

Affiliation BGI-Shenzhen, Shenzhen, China
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Wenwei Zhang,

Affiliation BGI-Shenzhen, Shenzhen, China
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Y. Tom Tang,

Affiliation Complete Genomics, Inc., Mountain View, California, United States of America
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Chunyu Geng,

Affiliation BGI-Shenzhen, Shenzhen, China
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Zhiyuan Lu ,

* E-mail: luzhiyuan8@gmail.com (ZL); xuxun@genomics.cn (XX)

Affiliation BGI-Shenzhen, Shenzhen, China
⨯
Xun Xu

* E-mail: luzhiyuan8@gmail.com (ZL); xuxun@genomics.cn (XX)

Affiliation BGI-Shenzhen, Shenzhen, China
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Single nucleotide polymorphisms
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Protons
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Sequence alignment
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Genomics
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Computer software
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Genome sequencing
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DNA sequencing
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High throughput sequencing
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