On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF

Ralf Eggeling; André Gohr; Jens Keilwagen; Michaela Mohr; Stefan Posch; Andrew D. Smith; Ivo Grosse

doi:10.1371/journal.pone.0085629

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Peer-reviewed

Research Article

On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF

Ralf Eggeling ,

Contributed equally to this work with: Ralf Eggeling, André Gohr, Jens Keilwagen

* E-mail: eggeling@informatik.uni-halle.de

Affiliation Institute of Computer Science, Martin Luther University Halle–Wittenberg, Halle/Saale, Germany
⨯
André Gohr ,

Contributed equally to this work with: Ralf Eggeling, André Gohr, Jens Keilwagen

Affiliation Institute of Computer Science, Martin Luther University Halle–Wittenberg, Halle/Saale, Germany
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Jens Keilwagen ,

Contributed equally to this work with: Ralf Eggeling, André Gohr, Jens Keilwagen

Affiliations Institute for Biosafety in Plant Biotechnology, Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, Quedlinburg, Germany, Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Germany
⨯
Michaela Mohr,

Affiliation Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Germany
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Stefan Posch,

Affiliation Institute of Computer Science, Martin Luther University Halle–Wittenberg, Halle/Saale, Germany
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Andrew D. Smith,

Affiliation Molecular and Computational Biology, University of Southern California, Los Angeles, United States of America
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Ivo Grosse

Affiliations Institute of Computer Science, Martin Luther University Halle–Wittenberg, Halle/Saale, Germany, Department of Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Germany, German Center of Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
⨯

On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF

Ralf Eggeling,
André Gohr,
Jens Keilwagen,
Michaela Mohr,
Stefan Posch,
Andrew D. Smith,
Ivo Grosse

Published: January 22, 2014
https://doi.org/10.1371/journal.pone.0085629

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Nucleotides
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Sequence motif analysis
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Markov models
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Nucleotide sequencing
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DNA-binding proteins
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Transcription factors
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Insulators
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