ClassyFlu: Classification of Influenza A Viruses with Discriminatively Trained Profile-HMMs

Open Access

Peer-reviewed

Research Article

Sandra Van der Auwera,

Affiliation Institute for Mathematics and Computer Science, Ernst-Moritz-Arndt Universität Greifswald, Greifswald, Germany
⨯
Ingo Bulla,

Affiliations Institute for Mathematics and Computer Science, Ernst-Moritz-Arndt Universität Greifswald, Greifswald, Germany, Theoretical Biology and Biophysics, Group T-6, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America
⨯
Mario Ziller,

Affiliation Federal Research Institute for Animal Health, Island of Riems, Greifswald, Germany
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Anne Pohlmann,

Affiliation Federal Research Institute for Animal Health, Island of Riems, Greifswald, Germany
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Timm Harder,

Affiliation Federal Research Institute for Animal Health, Island of Riems, Greifswald, Germany
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Mario Stanke

* E-mail: mario.stanke@uni-greifswald.de

Affiliation Institute for Mathematics and Computer Science, Ernst-Moritz-Arndt Universität Greifswald, Greifswald, Germany
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Hidden Markov models
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H5N1
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BLAST algorithm
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Influenza A virus
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Phylogenetic analysis
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Sequence databases
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Animal phylogenetics
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Viral pathogens
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