Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Noah Fahlgren; Stephanie R. Bollmann; Kristin D. Kasschau; Josh T. Cuperus; Caroline M. Press; Christopher M. Sullivan; Elisabeth J. Chapman; J. Steen Hoyer; Kerrigan B. Gilbert; Niklaus J. Grünwald; James C. Carrington

doi:10.1371/journal.pone.0077181

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Open Access

Peer-reviewed

Research Article

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Noah Fahlgren,

Affiliations Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America, Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Stephanie R. Bollmann,

Affiliation Horticultural Crops Research Laboratory, USDA Agricultural Research Service, Corvallis, Oregon, United States of America
⨯
Kristin D. Kasschau,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
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Josh T. Cuperus,

Current address: Department of Genome Sciences and Medicine, University of Washington, Seattle, Washington, United States of America

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
Caroline M. Press,

Affiliation Horticultural Crops Research Laboratory, USDA Agricultural Research Service, Corvallis, Oregon, United States of America
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Christopher M. Sullivan,

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
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Elisabeth J. Chapman,

Current address: Forage Genetics, International, West Salem, Wisconsin, United States of America

Affiliation Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯
J. Steen Hoyer,

Affiliation Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
⨯
Kerrigan B. Gilbert,

Affiliation Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
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Niklaus J. Grünwald ,

* E-mail: nik.grunwald@ars.usda.gov (NJG); JCarrington@danforthcenter.org (JCC)

Affiliation Horticultural Crops Research Laboratory, USDA Agricultural Research Service, Corvallis, Oregon, United States of America
⨯
James C. Carrington

* E-mail: nik.grunwald@ars.usda.gov (NJG); JCarrington@danforthcenter.org (JCC)

Affiliations Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America, Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
⨯

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Noah Fahlgren,
Stephanie R. Bollmann,
Kristin D. Kasschau,
Josh T. Cuperus,
Caroline M. Press,
Christopher M. Sullivan,
Elisabeth J. Chapman,
J. Steen Hoyer,
Kerrigan B. Gilbert,
Niklaus J. Grünwald

Published: October 21, 2013
https://doi.org/10.1371/journal.pone.0077181

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Small interfering RNA
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RNA sequencing
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MicroRNAs
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Phytophthora
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Transposable elements
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Genomics
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Double stranded RNA
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Genetic loci
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