Molecular Dynamics Simulations of Double-Stranded DNA in an Explicit Solvent Model with the Zero-Dipole Summation Method

Open Access

Peer-reviewed

Research Article

Takamasa Arakawa,

Affiliation Institute for Protein Research, Osaka University, Suita, Osaka, Japan
⨯
Narutoshi Kamiya ,

* E-mail: nkamiya@protein.osaka-u.ac.jp

Affiliation Institute for Protein Research, Osaka University, Suita, Osaka, Japan
⨯
Haruki Nakamura,

Affiliation Institute for Protein Research, Osaka University, Suita, Osaka, Japan
⨯
Ikuo Fukuda

Affiliation Institute for Protein Research, Osaka University, Suita, Osaka, Japan
⨯

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Nucleotides
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Electrostatics
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Biochemical simulations
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Crystal structure
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Atoms
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DNA structure
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Molecular dynamics
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Phosphates
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