SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

• Ruibang Luo ,

  Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Thomas Wong ,

  Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Jianqiao Zhu ,

  Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu

  Affiliations HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China, Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America

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• Chi-Man Liu ,

  Contributed equally to this work with: Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Xiaoqian Zhu,

  Affiliation School of Computer Science, National University of Defense Technology, Changsha, Hunan, China

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• Edward Wu,

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Lap-Kei Lee,

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Haoxiang Lin,

  Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China

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• Wenjuan Zhu,

  Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China

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• David W. Cheung,

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Hing-Fung Ting,

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Siu-Ming Yiu,

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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• Shaoliang Peng,

  Affiliation School of Computer Science, National University of Defense Technology, Changsha, Hunan, China

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• Chang Yu,

  Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China

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• Yingrui Li ,

  * E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)

  Affiliation BGI-Shenzhen, Shenzhen, Guangdong, China

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• Ruiqiang Li ,

  * E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)

  Affiliation Peking-Tsinghua Center for Life Sciences, Biodynamic Optical Imaging Center and School of Life Sciences, Peking University, Beijing, China

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•  [ ... ],
• Tak-Wah Lam

  * E-mail: liyr@genomics.cn (YL); lirq@pku.edu.cn (RL); twlam@cs.hku.hk (TL)

  Affiliation HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China

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