Identification of Transcriptome SNPs for Assessing Allele-Specific Gene Expression in a Super-Hybrid Rice Xieyou9308

Rongrong Zhai; Yue Feng; Xiaodeng Zhan; Xihong Shen; Weiming Wu; Ping Yu; Yingxin Zhang; Daibo Chen; Huimin Wang; Zechuan Lin; Liyong Cao; Shihua Cheng

doi:10.1371/journal.pone.0060668

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Open Access

Peer-reviewed

Research Article

Identification of Transcriptome SNPs for Assessing Allele-Specific Gene Expression in a Super-Hybrid Rice Xieyou9308

Rongrong Zhai ,

Contributed equally to this work with: Rongrong Zhai, Yue Feng

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Yue Feng ,

Contributed equally to this work with: Rongrong Zhai, Yue Feng

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Xiaodeng Zhan,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Xihong Shen,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Weiming Wu,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Ping Yu,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Yingxin Zhang,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Daibo Chen,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Huimin Wang,

Affiliation College of Agronomy, Shenyang Agricultural University, Shenyang, Liaoning, China
⨯
Zechuan Lin,

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Liyong Cao ,

* E-mail: caolycgf@mail.hz.zj.cn (LC); shcheng@mail.hz.zj.cn (SC)

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯
Shihua Cheng

* E-mail: caolycgf@mail.hz.zj.cn (LC); shcheng@mail.hz.zj.cn (SC)

Affiliation State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, Zhejiang, China
⨯

Identification of Transcriptome SNPs for Assessing Allele-Specific Gene Expression in a Super-Hybrid Rice Xieyou9308

Rongrong Zhai,
Yue Feng,
Xiaodeng Zhan,
Xihong Shen,
Weiming Wu,
Ping Yu,
Yingxin Zhang,
Daibo Chen,
Huimin Wang,
Zechuan Lin

Published: April 17, 2013
https://doi.org/10.1371/journal.pone.0060668

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Single nucleotide polymorphisms
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Gene expression
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RNA sequencing
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Heterosis
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Rice
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Genomics
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DNA methylation
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Transcriptome analysis
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