Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren; Tao Liu; Jie Dong; Lilian Sun; Jian Yang; Yafang Zhu; Qi Jin

doi:10.1371/journal.pone.0051188

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Open Access

Peer-reviewed

Research Article

Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren ,

Contributed equally to this work with: Xianwen Ren, Tao Liu

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Tao Liu ,

Contributed equally to this work with: Xianwen Ren, Tao Liu

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Jie Dong,

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Lilian Sun,

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Jian Yang,

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Yafang Zhu,

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯
Qi Jin

* E-mail: zdsys@vip.sina.com

Affiliation MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
⨯

Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren,
Tao Liu,
Jie Dong,
Lilian Sun,
Jian Yang,
Yafang Zhu,
Qi Jin

Published: December 7, 2012
https://doi.org/10.1371/journal.pone.0051188

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Transcriptome analysis
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Genomics
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Trichophyton
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Saccharomyces cerevisiae
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Protein structure comparison
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Gene prediction
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Next-generation sequencing
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Sequence alignment
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