GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

Open Access

Peer-reviewed

Research Article

Shuji Suzuki,

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯
Takashi Ishida,

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯
Ken Kurokawa,

Affiliation Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama-shi, Kanagawa, Japan
⨯
Yutaka Akiyama

* E-mail: akiyama@cs.titech.ac.jp

Affiliation Graduate School of Information Science and Engineering, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan
⨯

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Database searching
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BLAST algorithm
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Sequence alignment
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Sequence databases
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Acceleration
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Metagenomics
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Genomics
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Protein domains
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