Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Open Access

Peer-reviewed

Research Article

Yoojin Hong,

Affiliations Department of Computer Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania, United States of America, Center for Computational Proteomics, The Pennsylvania State University, University Park, Pennsylvania, United States of America
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Jaewoo Kang ,

* E-mail: kangj@korea.ac.kr (JK); dbv10@psu.edu (DBvR)

Affiliations Department of Computer Science and Engineering, Korea University, Seoul, Korea, Department of Biostatistics, College of Medicine, Korea University, Seoul, Korea
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Dongwon Lee,

Affiliations Department of Computer Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania, United States of America, College of Information Sciences and Technology, The Pennsylvania State University, University Park, Pennsylvania, United States of America
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Damian B. van Rossum

* E-mail: kangj@korea.ac.kr (JK); dbv10@psu.edu (DBvR)

Affiliations Center for Computational Proteomics, The Pennsylvania State University, University Park, Pennsylvania, United States of America, Department of Biology, The Pennsylvania State University, University Park, Pennsylvania, United States of America
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Sequence alignment
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Protein domains
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Protein structure comparison
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Protein structure
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BLAST algorithm
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Multiple alignment calculation
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Protein structure databases
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Structural proteins
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