Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression

Ana Elisa Garcia-Vedrenne; Maya Groner; Annie Page-Karjian; Gregor-Fausto Siegmund; Sonia Singhal; Jamie Sziklay; Steven Roberts

doi:10.1371/journal.pone.0074196

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Open Access

Peer-reviewed

Research Article

Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression

Ana Elisa Garcia-Vedrenne,

Affiliation Department of Ecology, Evolution & Marine Biology, University of California, Santa Barbara, Santa Barbara, California, United States of America
⨯
Maya Groner,

Affiliation Department of Health Management, Centre for Veterinary Epidemiological Research, University of Prince Edward Island, Charlottetown, Canada
⨯
Annie Page-Karjian,

Affiliation Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
⨯
Gregor-Fausto Siegmund,

Affiliation Department of Ecology and Evolution, University of Chicago, Chicago, Illinois, United States of America
⨯
Sonia Singhal,

Affiliation Department of Biology, University of Washington, Seattle, Washington, United States of America
⨯
Jamie Sziklay,

Affiliation Hawai’i Institute of Marine Biology, University of Hawai‘i, Kane‘ohe, Hawai‘i, United States of America
⨯
Steven Roberts

* E-mail: sr320@uw.edu

Affiliation School of Aquatic & Fishery Sciences, University of Washington, Seattle, Washington, United States of America
⨯

Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression

Ana Elisa Garcia-Vedrenne,
Maya Groner,
Annie Page-Karjian,
Gregor-Fausto Siegmund,
Sonia Singhal,
Jamie Sziklay,
Steven Roberts

Published: September 17, 2013
https://doi.org/10.1371/journal.pone.0074196

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Dataset deposition

Posted by jstajich on 31 Jan 2014 at 01:23 GMT

It would be great if the sequence data and the raw reads were deposited in public sequence repositories like EMBL/GenBank (for the genome and transcript assemblies) and ERA/SRA (for the raw reads) so they are archived and compared to other sequence data more easily.

No competing interests declared.

RE: Dataset deposition

sr320 replied to jstajich on 29 Jul 2014 at 21:19 GMT

Thanks for your comment. Note that the raw reads are in SRA, Accession numbers are in the Results.
I will add the transcriptome contigs to GenBank/TSA, and add accession to this thread once released.

No competing interests declared.

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Transcriptome analysis
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Single nucleotide polymorphisms
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Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression

Development of Genomic Resources for a thraustochytrid Pathogen and Investigation of Temperature Influences on Gene Expression

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Dataset deposition

Posted by jstajich on 31 Jan 2014 at 01:23 GMT

RE: Dataset deposition

sr320 replied to jstajich on 29 Jul 2014 at 21:19 GMT