An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard; Vincent Le Bourlot; Thomas Tully

doi:10.1371/journal.pone.0064387

Loading metrics

Open Access

Peer-reviewed

Research Article

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard,

Affiliation CNRS/UPMC/ENS, Écologie et Évolution, UMR 7625, École Normale Supérieure, Paris, France
⨯
Vincent Le Bourlot,

Affiliations CNRS/UPMC/ENS, Écologie et Évolution, UMR 7625, École Normale Supérieure, Paris, France, CERES - ERTI, École Normale Supérieure, Paris, France
⨯
Thomas Tully

* E-mail: tully@biologie.ens.fr

Affiliations CNRS/UPMC/ENS, Écologie et Évolution, UMR 7625, École Normale Supérieure, Paris, France, ESPE de Paris, Université Paris 4 - Sorbonne, Paris, France
⨯

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard,
Vincent Le Bourlot,
Thomas Tully

Published: May 29, 2013
https://doi.org/10.1371/journal.pone.0064387

Reader Comments

Post a new comment on this article

bug fixed

Posted by tully on 27 Feb 2014 at 09:03 GMT

To run the plugin smoothly under windows or linux, you have to fix a bug in the BP_sensor.java file. Open it with a text editor and search for "/" in the code and replace it with File.separator

For instance on line 323 replace
int marq_Temp=String.valueOf(analysed_directory).lastIndexOf("/",String.valueOf(analysed_directory).length()-2);

with
int marq_Temp=String.valueOf(analysed_directory).lastIndexOf(File.separator,String.valueOf(analysed_directory).length()-2);

Do the same changes on lines 391 and 400.
Thank you for your comprehension.
Thomas Tully

No competing interests declared.

Subject Areas
?

For more information about PLOS Subject Areas, click here.
We want your feedback. Do these Subject Areas make sense for this article? Click the target next to the incorrect Subject Area and let us know. Thanks for your help!

Ants
Is the Subject Area "Ants" applicable to this article?

Thanks for your feedback.
Image analysis
Is the Subject Area "Image analysis" applicable to this article?

Thanks for your feedback.
Animal sociality
Is the Subject Area "Animal sociality" applicable to this article?

Thanks for your feedback.
Open source software
Is the Subject Area "Open source software" applicable to this article?

Thanks for your feedback.
Census
Is the Subject Area "Census" applicable to this article?

Thanks for your feedback.
Daphnia
Is the Subject Area "Daphnia" applicable to this article?

Thanks for your feedback.
Ponds
Is the Subject Area "Ponds" applicable to this article?

Thanks for your feedback.
Measurement
Is the Subject Area "Measurement" applicable to this article?

Thanks for your feedback.

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

Reader Comments

Post Your Discussion Comment

Why should this posting be reviewed?

Thank You!

bug fixed

Posted by tully on 27 Feb 2014 at 09:03 GMT